Detailed information of SNP:
|
SNP ID:
sf1214820806(Gbrowse)
Chromosome: chr12 Position: 14820806 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 55.01% | 44.99% |
| All Indica | 789 | 35.49% | 64.51% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 368 | 33.42% | 66.58% |
| Indica II | 211 | 22.27% | 77.73% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820806 | A->G | INTERGENIC | None |