Detailed information of SNP:
|
SNP ID:
sf1214820991(Gbrowse)
Chromosome: chr12 Position: 14820991 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1287 | 77.70% | 22.30% |
| All Indica | 701 | 65.19% | 34.81% |
| All Japonica | 470 | 92.98% | 7.02% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 337 | 75.67% | 24.33% |
| Indica II | 174 | 32.18% | 67.82% |
| Indica Intermediate | 190 | 76.84% | 23.16% |
| Temperate Japonica | 323 | 97.52% | 2.48% |
| Tropical Japonica | 84 | 76.19% | 23.81% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214820991 | A->G | INTERGENIC | None |