Detailed information of SNP:
|
SNP ID:
sf1214821144(Gbrowse)
Chromosome: chr12 Position: 14821144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 68.96% | 31.04% |
| All Indica | 785 | 55.67% | 44.33% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 23 | 47.83% | 52.17% |
| Indica I | 372 | 64.52% | 35.48% |
| Indica II | 205 | 24.88% | 75.12% |
| Indica Intermediate | 208 | 70.19% | 29.81% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 36 | 69.44% | 30.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214821144 | C->T | INTERGENIC | None |