Detailed information of SNP:
|
SNP ID:
sf1214822181(Gbrowse)
Chromosome: chr12 Position: 14822181 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 66.26% | 33.74% |
| All Indica | 767 | 93.61% | 6.39% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 194 | 85.05% | 14.95% |
| Temperate Japonica | 334 | 9.28% | 90.72% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214822181 | A->G | INTERGENIC | None |