Detailed information of SNP:
|
SNP ID:
sf1214828202(Gbrowse)
Chromosome: chr12 Position: 14828202 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.34% | 35.66% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214828202 | G->A | INTERGENIC | None |