Detailed information of SNP:
|
SNP ID:
sf1214829059(Gbrowse)
Chromosome: chr12 Position: 14829059 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.60% | 49.40% |
| All Indica | 798 | 68.67% | 31.33% |
| All Japonica | 496 | 16.94% | 83.06% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 67 | 26.87% | 73.13% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214829059 | C->T | INTERGENIC | None |