Detailed information of SNP:
|
SNP ID:
sf1214829312(Gbrowse)
Chromosome: chr12 Position: 14829312 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.62% | 36.38% |
| All Indica | 793 | 90.67% | 9.33% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214829312 | A->T | INTERGENIC | None |