Detailed information of SNP:
|
SNP ID:
sf1214831591(Gbrowse)
Chromosome: chr12 Position: 14831591 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.38% | 39.62% |
| All Indica | 789 | 41.83% | 58.17% |
| All Japonica | 496 | 83.87% | 16.13% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 56.52% | 43.48% |
| Indica II | 211 | 18.96% | 81.04% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214831591 | C->T | INTERGENIC | None |