Detailed information of SNP:
|
SNP ID:
sf1214831757(Gbrowse)
Chromosome: chr12 Position: 14831757 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.71% | 33.29% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 65.78% | 34.22% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214831757 | G->A | INTERGENIC | None |