Detailed information of SNP:
|
SNP ID:
sf1214834925(Gbrowse)
Chromosome: chr12 Position: 14834925 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.74% | 28.26% |
| All Indica | 799 | 57.32% | 42.68% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214834925 | G->T | INTERGENIC | None |