Detailed information of SNP:
|
SNP ID:
sf1214836444(Gbrowse)
Chromosome: chr12 Position: 14836444 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 69.27% | 30.73% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214836444 | C->T | LOC_Os12g25640(LOC_Os12g25640.1) | INTRON |