Detailed information of SNP:
|
SNP ID:
sf1214838414(Gbrowse)
Chromosome: chr12 Position: 14838414 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 69.63% | 30.37% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 24.55% | 75.45% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214838414 | T->C | LOC_Os12g25640(LOC_Os12g25640.1) | INTRON |