Detailed information of SNP:
|
SNP ID:
sf1214846728(Gbrowse)
Chromosome: chr12 Position: 14846728 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 69.30% | 30.70% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214846728 | G->A | INTERGENIC | None |