Detailed information of SNP:
|
SNP ID:
sf1214850068(Gbrowse)
Chromosome: chr12 Position: 14850068 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.52% | 40.48% |
| All Indica | 794 | 49.75% | 50.25% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 32.98% | 67.02% |
| Indica II | 211 | 79.62% | 20.38% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214850068 | G->A | INTERGENIC | None |