Detailed information of SNP:
|
SNP ID:
sf1214850841(Gbrowse)
Chromosome: chr12 Position: 14850841 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 67.37% | 32.63% |
| All Indica | 795 | 94.09% | 5.91% |
| All Japonica | 496 | 18.35% | 81.65% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214850841 | A->T | INTERGENIC | None |