Detailed information of SNP:
|
SNP ID:
sf1214861085(Gbrowse)
Chromosome: chr12 Position: 14861085 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1251 | 54.52% | 45.48% |
| All Indica | 701 | 36.66% | 63.34% |
| All Japonica | 488 | 81.76% | 18.24% |
| Aus | 24 | 41.67% | 58.33% |
| Indica I | 332 | 47.29% | 52.71% |
| Indica II | 189 | 20.11% | 79.89% |
| Indica Intermediate | 180 | 34.44% | 65.56% |
| Temperate Japonica | 331 | 92.75% | 7.25% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 7 | 28.57% | 71.43% |
| Intermediate | 31 | 45.16% | 54.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214861085 | A->G | INTERGENIC | None |