Detailed information of SNP:
|
SNP ID:
sf1214861171(Gbrowse)
Chromosome: chr12 Position: 14861171 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 62.11% | 37.89% |
| All Indica | 798 | 56.64% | 43.36% |
| All Japonica | 492 | 80.69% | 19.31% |
| Aus | 60 | 10.00% | 90.00% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 212 | 28.30% | 71.70% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 332 | 92.77% | 7.23% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214861171 | C->T | INTERGENIC | None |