Detailed information of SNP:
|
SNP ID:
sf1214861264(Gbrowse)
Chromosome: chr12 Position: 14861264 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.94% | 40.06% |
| All Indica | 799 | 54.19% | 45.81% |
| All Japonica | 491 | 80.45% | 19.55% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 65.87% | 34.13% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 332 | 92.77% | 7.23% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214861264 | G->A | INTERGENIC | None |