Detailed information of SNP:
|
SNP ID:
sf1214862505(Gbrowse)
Chromosome: chr12 Position: 14862505 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.44% | 37.56% |
| All Indica | 799 | 54.44% | 45.56% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214862505 | C->T | INTERGENIC | None |