Detailed information of SNP:
|
SNP ID:
sf1214865358(Gbrowse)
Chromosome: chr12 Position: 14865358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.17% | 40.83% |
| All Indica | 798 | 49.00% | 51.00% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214865358 | G->A | INTERGENIC | None |