Detailed information of SNP:
|
SNP ID:
sf1214870117(Gbrowse)
Chromosome: chr12 Position: 14870117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.07% | 49.93% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214870117 | T->C | INTERGENIC | None |