Detailed information of SNP:
|
SNP ID:
sf1214871783(Gbrowse)
Chromosome: chr12 Position: 14871783 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.11% | 49.89% |
| All Indica | 799 | 22.78% | 77.22% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214871783 | G->C | INTERGENIC | None |