Detailed information of SNP:
|
SNP ID:
sf1214877268(Gbrowse)
Chromosome: chr12 Position: 14877268 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.24% | 40.76% |
| All Indica | 795 | 48.30% | 51.70% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 55.08% | 44.92% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214877268 | C->T | INTERGENIC | None |