Detailed information of SNP:
|
SNP ID:
sf1214882660(Gbrowse)
Chromosome: chr12 Position: 14882660 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.33% | 42.67% |
| All Indica | 799 | 36.67% | 63.33% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214882660 | C->T | LOC_Os12g25680(LOC_Os12g25680.1) | Synonymous |