Detailed information of SNP:
|
SNP ID:
sf1214922343(Gbrowse)
Chromosome: chr12 Position: 14922343 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 75.96% | 24.04% |
| All Indica | 790 | 67.22% | 32.78% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 69.73% | 30.27% |
| Indica II | 210 | 52.86% | 47.14% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214922343 | C->T | LOC_Os12g25734(LOC_Os12g25734.1) | Non-Synonymous SNP |