Detailed information of SNP:
|
SNP ID:
sf1214926934(Gbrowse)
Chromosome: chr12 Position: 14926934 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 98.77% | 1.23% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 460 | 96.30% | 3.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 94.74% | 5.26% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214926934 | C->T | LOC_Os12g25750(LOC_Os12g25750.1) | INTRON |