Detailed information of SNP:
|
SNP ID:
sf1214938248(Gbrowse)
Chromosome: chr12 Position: 14938248 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.87% | 48.13% |
| All Indica | 799 | 33.54% | 66.46% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 43.47% | 56.53% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 211 | 37.91% | 62.09% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214938248 | C->T | INTERGENIC | None |