Detailed information of SNP:
|
SNP ID:
sf1214942033(Gbrowse)
Chromosome: chr12 Position: 14942033 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.53% | 49.47% |
| All Indica | 799 | 32.92% | 67.08% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 42.40% | 57.60% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214942033 | G->A | INTERGENIC | None |