Detailed information of SNP:
|
SNP ID:
sf1214945848(Gbrowse)
Chromosome: chr12 Position: 14945848 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 66.12% | 33.88% |
| All Indica | 796 | 49.37% | 50.63% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 29.68% | 70.32% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 209 | 52.63% | 47.37% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214945848 | T->C | INTERGENIC | None |