Detailed information of SNP:
|
SNP ID:
sf1214948279(Gbrowse)
Chromosome: chr12 Position: 14948279 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 74.82% | 25.18% |
| All Indica | 794 | 76.70% | 23.30% |
| All Japonica | 495 | 77.98% | 22.02% |
| Aus | 40 | 25.00% | 75.00% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 210 | 47.62% | 52.38% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 333 | 92.49% | 7.51% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 8 | 12.50% | 87.50% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214948279 | C->T | INTERGENIC | None |