Detailed information of SNP:
|
SNP ID:
sf1214949789(Gbrowse)
Chromosome: chr12 Position: 14949789 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 89.56% | 10.44% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214949789 | C->A | INTERGENIC | None |