Detailed information of SNP:
|
SNP ID:
sf1214950271(Gbrowse)
Chromosome: chr12 Position: 14950271 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.95% | 24.05% |
| All Indica | 798 | 76.32% | 23.68% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214950271 | C->T | INTERGENIC | None |