Detailed information of SNP:
|
SNP ID:
sf1214955381(Gbrowse)
Chromosome: chr12 Position: 14955381 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 32.29% | 67.71% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 23.20% | 76.80% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214955381 | T->C | INTERGENIC | None |