Detailed information of SNP:
|
SNP ID:
sf1214958978(Gbrowse)
Chromosome: chr12 Position: 14958978 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 87.89% | 12.11% |
| All Indica | 788 | 84.14% | 15.86% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.42% | 8.58% |
| Indica II | 207 | 65.22% | 34.78% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214958978 | T->C | INTERGENIC | None |