Detailed information of SNP:
|
SNP ID:
sf1214962533(Gbrowse)
Chromosome: chr12 Position: 14962533 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.53% | 28.47% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214962533 | T->C | INTERGENIC | None |