Detailed information of SNP:
|
SNP ID:
sf1214970682(Gbrowse)
Chromosome: chr12 Position: 14970682 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 80.30% | 19.70% |
| All Indica | 796 | 72.61% | 27.39% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 59.89% | 40.11% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214970682 | G->A | INTERGENIC | None |