Detailed information of SNP:
|
SNP ID:
sf1214970721(Gbrowse)
Chromosome: chr12 Position: 14970721 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 78.52% | 21.48% |
| All Indica | 797 | 72.27% | 27.73% |
| All Japonica | 460 | 87.17% | 12.83% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 209 | 77.51% | 22.49% |
| Temperate Japonica | 302 | 90.40% | 9.60% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214970721 | C->T | INTERGENIC | None |