Detailed information of SNP:
|
SNP ID:
sf1214982363(Gbrowse)
Chromosome: chr12 Position: 14982363 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 94.77% | 5.23% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 494 | 92.11% | 7.89% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214982363 | C->T | LOC_Os12g25830(LOC_Os12g25830.1) | INTRON |