Detailed information of SNP:
|
SNP ID:
sf1214983546(Gbrowse)
Chromosome: chr12 Position: 14983546 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 87.80% | 12.20% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 480 | 67.08% | 32.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 323 | 54.18% | 45.82% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214983546 | A->G | INTERGENIC | None |