Detailed information of SNP:
|
SNP ID:
sf1214986556(Gbrowse)
Chromosome: chr12 Position: 14986556 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 798 | 50.25% | 49.75% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214986556 | C->A | LOC_Os12g25840(LOC_Os12g25840.1) | INTRON |