Detailed information of SNP:
|
SNP ID:
sf1214992477(Gbrowse)
Chromosome: chr12 Position: 14992477 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 63.26% | 36.74% |
| All Indica | 736 | 91.58% | 8.42% |
| All Japonica | 488 | 14.14% | 85.86% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 330 | 91.21% | 8.79% |
| Indica II | 205 | 95.61% | 4.39% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 89 | 43.82% | 56.18% |
| Japonica Intermediate | 65 | 24.62% | 75.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214992477 | A->T | LOC_Os12g25850(LOC_Os12g25850.1) | Non-Synonymous SNP |