Detailed information of SNP:
|
SNP ID:
sf1214992738(Gbrowse)
Chromosome: chr12 Position: 14992738 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 64.68% | 35.32% |
| All Indica | 789 | 92.27% | 7.73% |
| All Japonica | 495 | 15.56% | 84.44% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214992738 | T->A | LOC_Os12g25850(LOC_Os12g25850.1) | INTRON |