Detailed information of SNP:
|
SNP ID:
sf1214992938(Gbrowse)
Chromosome: chr12 Position: 14992938 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 65.01% | 34.99% |
| All Indica | 797 | 93.48% | 6.52% |
| All Japonica | 492 | 13.21% | 86.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 332 | 5.42% | 94.58% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214992938 | G->A | LOC_Os12g25850(LOC_Os12g25850.1) | INTRON |