Detailed information of SNP:
|
SNP ID:
sf1214993122(Gbrowse)
Chromosome: chr12 Position: 14993122 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 67.61% | 32.39% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 496 | 19.15% | 80.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214993122 | G->A | LOC_Os12g25850(LOC_Os12g25850.1) | INTRON |