Detailed information of SNP:
|
SNP ID:
sf1215002076(Gbrowse)
Chromosome: chr12 Position: 15002076 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 63.69% | 36.31% |
| All Indica | 792 | 85.35% | 14.65% |
| All Japonica | 496 | 23.19% | 76.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 81.45% | 18.55% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215002076 | A->G | INTERGENIC | None |