Detailed information of SNP:
|
SNP ID:
sf1215002726(Gbrowse)
Chromosome: chr12 Position: 15002726 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.71% | 33.29% |
| All Indica | 795 | 89.94% | 10.06% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215002726 | C->G | INTERGENIC | None |