Detailed information of SNP:
|
SNP ID:
sf1215012636(Gbrowse)
Chromosome: chr12 Position: 15012636 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 67.54% | 32.46% |
| All Indica | 794 | 91.56% | 8.44% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215012636 | C->T | INTERGENIC | None |