Detailed information of SNP:
|
SNP ID:
sf1215033784(Gbrowse)
Chromosome: chr12 Position: 15033784 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 67.12% | 32.88% |
| All Indica | 790 | 52.91% | 47.09% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 372 | 52.42% | 47.58% |
| Indica II | 209 | 58.85% | 41.15% |
| Indica Intermediate | 209 | 47.85% | 52.15% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215033784 | G->A | INTERGENIC | None |