Detailed information of SNP:
|
SNP ID:
sf1215045852(Gbrowse)
Chromosome: chr12 Position: 15045852 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 91.44% | 8.56% |
| All Indica | 749 | 85.05% | 14.95% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 77.68% | 22.32% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215045852 | G->A | LOC_Os12g25930(LOC_Os12g25930.1) | INTRON |