Detailed information of SNP:
|
SNP ID:
sf1215045999(Gbrowse)
Chromosome: chr12 Position: 15045999 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 97.09% | 2.91% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 66 | 87.88% | 12.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1215045999 | G->A | LOC_Os12g25930(LOC_Os12g25930.1) | INTRON |